BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034C12SP1|AL429884
(843 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 1585 0.0
>3x_Contig1530
Length = 6216
Score = 1585 bits (795), Expect = 0.0
Identities = 829/844 (98%), Gaps = 1/844 (0%)
Strand = Plus / Plus
Query: 1 ccactgtccctatckgctatctagcgaaaccacagccaagggaacgggcttggcagaatc 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 ccactgtccctatctactatctagcgaaaccacagccaagggaacgggcttggcagaatc 4425
Query: 61 agcggggaaagaagaccctgttgagcttgactctagtttgacattgtgaagagacataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4426 agcggggaaagaagaccctgttgagcttgactctagtttgacattgtgaagagacataga 4485
Query: 121 gggtgtagcataagtgggagcttcggcgccagtgaaataccactacctttatagtttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4486 gggtgtagcataagtgggagcttcggcgccagtgaaataccactacctttatagtttctt 4545
Query: 181 tacttattcaattaagcggastggnaattcattttccacgttctagcattcaaagtccta 240
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 4546 tacttattcaattaagcggagctggaattcattttccacgttctagcattcaaagtccta 4605
Query: 241 tacgggctgatccgggttgaagacattgtcaggtggggagtttggctggggcggcacatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 tacgggctgatccgggttgaagacattgtcaggtggggagtttggctggggcggcacatc 4665
Query: 301 tgtwaaacgataacgcagatgtcctaagggggactcatggagaacagaaatctccagtag 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 tgttaaacgataacgcagatgtcctaagggggactcatggagaacagaaatctccagtag 4725
Query: 361 aacaaaagggtaaaartccccttgattttgattttcagtgtgaatacaaaccatgaaagt 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 aacaaaagggtaaaagtccccttgattttgattttcagtgtgaatacaaaccatgaaagt 4785
Query: 421 gtggcctatcgatcctttaggtcctcggaatttgaggctagaggtgccagaaaarttacc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4786 gtggcctatcgatcctttaggtcctcggaatttgaggctagaggtgccagaaaagttacc 4845
Query: 481 acagggataactggcttgtggcagtcaagcgttcatagcgacattgctttttgattcttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 acagggataactggcttgtggcagtcaagcgttcatagcgacattgctttttgattcttc 4905
Query: 541 gatgtcggctcttcctatcataccgaagcagaattcggtaagcgttggattgttcaccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 gatgtcggctcttcctatcataccgaagcagaattcggtaagcgttggattgttcaccca 4965
Query: 601 ctaatagggaacgtgagcygggtttagaccgtcgtgaga-aggttagttttaccctactg 659
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4966 ctaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactg 5025
Query: 660 atgaatgttatcgcaatagtaattgaacttagtacgagaggaacagttcattcggataat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 atgaatgttatcgcaatagtaattgaacttagtacgagaggaacagttcattcggataat 5085
Query: 720 tggtttttgcggctgtctgatcaggcattgccgcgaastatccatccgctggattatggc 779
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5086 tggtttttgcggctgtctgatcaggcattgccgcgaagctaccatccgctggattatggc 5145
Query: 780 tgaacgcctctaagtcagaatccatgctagaacgcgatgatttctttgccttgcacaata 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 tgaacgcctctaagtcagaatccatgctagaacgcgatgatttctttgccttgcacaata 5205
Query: 840 taga 843
||||
Sbjct: 5206 taga 5209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3879
Number of Sequences: 1807
Number of extensions: 3879
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 843
length of database: 10,358,551
effective HSP length: 16
effective length of query: 827
effective length of database: 10,329,639
effective search space: 8542611453
effective search space used: 8542611453
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)